STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0591KEGG: dfe:Dfer_1387 hypothetical protein; SPTR: Putative uncharacterized protein. (396 aa)    
Predicted Functional Partners:
Lbys_0590
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterPro IPR006047:IPR006589; KEGG: dfe:Dfer_2758 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: Alpha amylase catalytic region; PFAM: Alpha amylase, catalytic domain.
       0.642
Lbys_1280
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterProIPR011659:IPR006665:IPR019734:IPR013026:IPR 006664; KEGG: sli:Slin_1781 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
  
 
 0.636
leuS
COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR001412:IPR015413:IPR013155:IPR002302; KEGG: dfe:Dfer_2634 leucyl-tRNA synthetase; PFAM: tRNA synthetase valyl/leucyl anticodon-binding; tRNA synthetase class I (M); SPTR: Leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; tRNA synthetases class I (M); TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.603
Lbys_0593
Redoxin domain protein; InterPro IPR017936:IPR013740; KEGG: sli:Slin_1863 redoxin domain protein; PFAM: Redoxin domain protein; SPTR: Redoxin domain protein; PFAM: Redoxin.
  
    0.599
Lbys_0589
Beta-phosphoglucomutase; COGs: COG0637 phosphatase/phosphohexomutase; InterProIPR005834:IPR010972:IPR010976:IPR006402:IPR 005833; KEGG: dfe:Dfer_2757 beta-phosphoglucomutase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Beta-phosphoglucomutase; TIGRFAM: beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: beta-phosphoglucomutase family hydrolase; haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; beta-phosphogluc [...]
       0.470
Lbys_0594
KEGG: sli:Slin_4820 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.458
Lbys_0595
DoxX family protein; InterPro IPR011637; KEGG: cat:CA2559_01610 hypothetical protein; PFAM: DoxX family protein; SPTR: Putative uncharacterized protein; PFAM: DoxX.
       0.458
Lbys_1182
InterPro IPR000297; KEGG: sli:Slin_0807 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: OmpA family; PPIC-type PPIASE domain.
  
 
 0.416
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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