STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0614Septum formation initiator; InterPro IPR007060; KEGG: sli:Slin_5031 hypothetical protein; PFAM: Septum formation initiator; SPTR: Putative uncharacterized protein; PFAM: Septum formation initiator. (103 aa)    
Predicted Functional Partners:
Lbys_2038
KEGG: sli:Slin_4754 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 
 0.973
Lbys_0615
COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867:IPR000106; KEGG: sli:Slin_5030 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase.
       0.793
Lbys_0616
KEGG: dfe:Dfer_2817 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
  
    0.645
Lbys_1723
InterPro IPR019852; KEGG: sli:Slin_3224 gliding motility-associated protein GldL; SPTR: Gliding motility-associated protein GldL; TIGRFAM: gliding motility-associated protein GldL; TIGRFAM: gliding motility-associated protein GldL.
  
     0.582
rpmC
LSU ribosomal protein L29P; InterPro IPR001854:IPR018254; KEGG: sli:Slin_5779 ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: Ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
     0.579
Lbys_0583
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: fba:FIC_01142 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix.
  
     0.561
Lbys_1563
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
   
 0.554
Lbys_3231
KEGG: sli:Slin_2396 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.504
Lbys_3234
Gliding motility-associated lipoprotein GldD; InterPro IPR019850; KEGG: chu:CHU_3683 gliding motility-related protein; SPTR: Possible gliding motility-related protein; TIGRFAM: gliding motility-associated lipoprotein GldD; TIGRFAM: gliding motility-associated lipoprotein GldD.
  
     0.471
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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