STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Coexpression
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[Homology]
Score
Lbys_0645KEGG: dfe:Dfer_2677 hypothetical protein; SPTR: Putative uncharacterized protein. (458 aa)    
Predicted Functional Partners:
pyrB
COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; InterPro IPR002082:IPR006130:IPR006132:IPR006131; KEGG: dfe:Dfer_2657 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; SPTR: Aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase; Belongs [...]
       0.791
nuoC
NADH dehydrogenase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.
       0.773
Lbys_0644
Phosphodiesterase, MJ0936 family; COGs: COG0622 phosphoesterase; InterPro IPR000979:IPR004843; KEGG: chu:CHU_2672 hypothetical protein; PFAM: metallophosphoesterase; SPTR: Putative uncharacterized protein; TIGRFAM: phosphodiesterase, MJ0936 family; TIGRFAM: phosphoesterase, MJ0936 family.
       0.773
Lbys_0646
Zinc/iron permease; COGs: COG0428 divalent heavy-metal cations transporter; InterPro IPR003689; KEGG: cbh:CLC_1220 ZIP family zinc transporter; PFAM: zinc/iron permease; SPTR: Zinc transporter, ZIP family; PFAM: ZIP Zinc transporter.
       0.592
Lbys_0639
Regulatory protein MarR; InterPro IPR000835; KEGG: chu:CHU_0954 transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator; PFAM: MarR family.
       0.572
Lbys_0640
KEGG: sli:Slin_0763 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Secretory lipase.
       0.572
Lbys_0641
KEGG: dfe:Dfer_0226 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.572
Lbys_0636
5'(3')-deoxyribonucleotidase; COGs: COG4502 conserved hypothetical protein; KEGG: rbi:RB2501_10642 5'(3')-deoxyribonucleotidase; SPTR: 5'(3')-deoxyribonucleotidase; PFAM: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C).
       0.423
Lbys_0637
KEGG: chu:CHU_2148 polysaccharide lyase polysaccharide lyase family 14 protein; SPTR: Candidate polysaccharide lyase, polysaccharide lyase family 14 protein.
       0.423
Lbys_0638
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.423
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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