STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0652KEGG: cpi:Cpin_5477 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2911). (274 aa)    
Predicted Functional Partners:
Lbys_1601
LmbE family protein; COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: dfe:Dfer_5787 LmbE family protein; PFAM: LmbE family protein; SPTR: LmbE family protein; PFAM: GlcNAc-PI de-N-acetylase.
 
     0.755
Lbys_1109
COGs: COG0591 Na+/proline symporter; InterPro IPR001734:IPR001991; KEGG: sli:Slin_1640 SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; SPTR: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.677
bshC
Protein of unknown function UCP012535; COGs: COG4365 conserved hypothetical protein; InterPro IPR011199; KEGG: dfe:Dfer_3548 hypothetical protein; PFAM: protein of unknown function UCP012535; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2317); Belongs to the BshC family.
  
     0.621
Lbys_1657
KEGG: sli:Slin_1064 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.516
Lbys_3347
Protein of unknown function DUF2480; InterPro IPR018914; KEGG: sli:Slin_4879 hypothetical protein; PFAM: Protein of unknown function DUF2480; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2480).
  
     0.514
Lbys_3583
Gliding motility-associated protein GldC; InterPro IPR019854; KEGG: dfe:Dfer_0458 motility-like protein; SPTR: Motility-like protein; TIGRFAM: gliding motility-associated protein GldC; TIGRFAM: gliding motility-associated protein GldC.
  
     0.514
Lbys_0650
InterPro IPR000834; KEGG: psl:Psta_3804 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; SPTR: Putative uncharacterized protein; PFAM: Zinc carboxypeptidase.
       0.503
Lbys_0651
InterPro IPR000834; KEGG: psl:Psta_3805 peptidase M14 carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; SPTR: Putative uncharacterized protein; PFAM: Zinc carboxypeptidase.
       0.503
Lbys_2646
KEGG: sli:Slin_5545 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.493
Lbys_1910
UspA domain-containing protein; InterPro IPR006015:IPR006016; KEGG: dfe:Dfer_4990 UspA domain protein; PFAM: UspA domain-containing protein; SPTR: UspA domain protein; PFAM: Universal stress protein family.
  
     0.459
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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