Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_0682KEGG: chu:CHU_3449 hypothetical protein; SPTR: Putative uncharacterized protein. (559 aa)    
Predicted Functional Partners:
Lbys_0680
InterPro IPR003961; KEGG: cpi:Cpin_2773 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; PFAM: Fibronectin type III domain.
 
     0.947
Lbys_0681
KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Bacteroides forsythus 147-residue repeat.
 
     0.947
Lbys_0679
Hypothetical protein; InterPro IPR003961; KEGG: fjo:Fjoh_0912 fibronectin, type III domain-containing protein; SPTR: Fibronectin, type III domain protein.
 
     0.859
Lbys_0686
KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.835
Lbys_0685
InterPro IPR003961; KEGG: cpi:Cpin_2773 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; PFAM: Fibronectin type III domain.
 
     0.833
Lbys_2991
Hypothetical protein; KEGG: cpi:Cpin_2776 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; TIGRFAM: Bacteroides forsythus 147-residue repeat.
 
     0.788
Lbys_2002
KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.779
Lbys_2003
Hypothetical protein; InterPro IPR003961; KEGG: cpi:Cpin_2773 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein.
 
     0.779
Lbys_0683
InterPro IPR003961; KEGG: fjo:Fjoh_0912 fibronectin, type III domain-containing protein; PFAM: Fibronectin type III domain protein; SPTR: Fibronectin, type III domain protein.
 
     0.690
Lbys_2990
Fibronectin type III domain protein; InterPro IPR003961:IPR018506; KEGG: cth:Cthe_1235 cellulose 1,4-beta-cellobiosidase; PFAM: Fibronectin type III domain protein; SPTR: Cellulose 1,4-beta-cellobiosidase.
 
     0.630
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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