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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0686KEGG: cpi:Cpin_2772 hypothetical protein; SPTR: Putative uncharacterized protein. (2057 aa)    
Predicted Functional Partners:
Lbys_0685
InterPro IPR003961; KEGG: cpi:Cpin_2773 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; PFAM: Fibronectin type III domain.
 
    0.952
Lbys_0687
KEGG: chu:CHU_3449 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.947
Lbys_0680
InterPro IPR003961; KEGG: cpi:Cpin_2773 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; PFAM: Fibronectin type III domain.
 
    0.849
Lbys_0682
KEGG: chu:CHU_3449 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.834
Lbys_0684
Hypothetical protein; KEGG: fjo:Fjoh_0912 fibronectin, type III domain-containing protein; SPTR: Fibronectin, type III domain protein.
 
     0.827
Lbys_2003
Hypothetical protein; InterPro IPR003961; KEGG: cpi:Cpin_2773 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein.
 
    0.799
Lbys_2001
Hypothetical protein; InterPro IPR002047; KEGG: chu:CHU_3449 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.779
Lbys_2992
KEGG: cpi:Cpin_2775 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.779
Lbys_0683
InterPro IPR003961; KEGG: fjo:Fjoh_0912 fibronectin, type III domain-containing protein; PFAM: Fibronectin type III domain protein; SPTR: Fibronectin, type III domain protein.
 
     0.629
Lbys_2435
Hypothetical protein; KEGG: phe:Phep_1050 YD repeat-containing protein; SPTR: Putative uncharacterized protein; TIGRFAM: RHS repeat-associated core domain.
  
     0.598
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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