STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0713GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: cps:CPS_1640 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family; PFAM: Acetyltransferase (GNAT) family. (144 aa)    
Predicted Functional Partners:
Lbys_0715
Peptidase S41; COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: sli:Slin_2089 peptidase S41; PFAM: peptidase S41; SMART: peptidase S41; SPTR: Peptidase S41; PFAM: Peptidase family S41.
  
    0.558
Lbys_0716
Transcription activator effector binding protein; COGs: COG3708 conserved hypothetical protein; InterPro IPR010499; KEGG: chu:CHU_2283 hypothetical protein; PFAM: transcription activator effector binding; SPTR: Putative uncharacterized protein; PFAM: Bacterial transcription activator, effector binding domain.
       0.557
Lbys_0714
KEGG: ngr:NAEGRDRAFT_45977 hypothetical protein; SPTR: Predicted protein.
       0.556
Lbys_0712
COGs: COG1289 membrane protein; KEGG: cts:Ctha_2029 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.551
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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