STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0721RES domain protein; COGs: COG5654 conserved hypothetical protein; InterPro IPR014914; KEGG: sli:Slin_2340 RES domain protein; PFAM: RES domain protein; SPTR: RES domain protein; PFAM: RES domain. (150 aa)    
Predicted Functional Partners:
Lbys_0722
KEGG: sli:Slin_2341 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2384); TIGRFAM: putative toxin-antitoxin system antitoxin component, TIGR02293 family.
 
 
 0.997
Lbys_0723
ATP dependent helicase, Lhr family; COGs: COG1201 Lhr-like helicase; InterProIPR017170:IPR014021:IPR001650:IPR014001:IPR 011545:IPR013701; KEGG: fba:FIC_01804 helicase domain protein; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Probable ATP-dependent helicase; PFAM: Helicase conserved C-terminal domain; DEAD/H associated; DEAD/DEAH box helicase.
       0.504
Lbys_0724
Metallophosphoesterase; COGs: COG1407 ICC-like phosphoesterase; InterPro IPR003006:IPR004843; KEGG: fba:FIC_01803 hypothetical protein; PFAM: metallophosphoesterase; SPTR: Putative uncharacterized protein; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: putative phosphoesterase, SbcD/Mre11-related.
       0.504
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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