Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_0722KEGG: sli:Slin_2341 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2384); TIGRFAM: putative toxin-antitoxin system antitoxin component, TIGR02293 family. (146 aa)    
Predicted Functional Partners:
Lbys_0721
RES domain protein; COGs: COG5654 conserved hypothetical protein; InterPro IPR014914; KEGG: sli:Slin_2340 RES domain protein; PFAM: RES domain protein; SPTR: RES domain protein; PFAM: RES domain.
 
 
 0.995
Lbys_2283
InterPro IPR007452; KEGG: dfe:Dfer_3195 protein of unknown function DUF490; PFAM: protein of unknown function DUF490; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF490).
 
     0.508
Lbys_0723
ATP dependent helicase, Lhr family; COGs: COG1201 Lhr-like helicase; InterProIPR017170:IPR014021:IPR001650:IPR014001:IPR 011545:IPR013701; KEGG: fba:FIC_01804 helicase domain protein; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Probable ATP-dependent helicase; PFAM: Helicase conserved C-terminal domain; DEAD/H associated; DEAD/DEAH box helicase.
       0.504
Lbys_0724
Metallophosphoesterase; COGs: COG1407 ICC-like phosphoesterase; InterPro IPR003006:IPR004843; KEGG: fba:FIC_01803 hypothetical protein; PFAM: metallophosphoesterase; SPTR: Putative uncharacterized protein; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: putative phosphoesterase, SbcD/Mre11-related.
       0.504
Lbys_1429
COGs: COG1538 Outer membrane protein; KEGG: dfe:Dfer_4162 outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein.
  
     0.482
Lbys_1727
KEGG: sli:Slin_3228 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.478
Lbys_2551
Tetratricopeptide repeat protein; InterPro IPR019734:IPR013026; KEGG: sli:Slin_5690 tetratricopeptide repeat protein; SPTR: Tetratricopeptide repeat protein.
  
     0.452
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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