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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0728Auxin Efflux Carrier; COGs: COG0679 permease; InterPro IPR004776; KEGG: dap:Dacet_1807 auxin efflux carrier; PFAM: Auxin Efflux Carrier; SPTR: Putative uncharacterized protein; PFAM: Membrane transport protein. (304 aa)    
Predicted Functional Partners:
Lbys_0673
COGs: COG0281 Malic enzyme; InterPro IPR012188:IPR012301:IPR012302:IPR002505; KEGG: dfe:Dfer_0248 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., phosphate acetyltransferase; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; SPTR: Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase; PFAM: Malic enzyme, NAD binding domain; Phosphate acetyl/butaryl transferase; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase.
  
  
 0.869
Lbys_0727
GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: zpr:ZPR_1937 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
  
  
 0.561
Lbys_0730
Histidine kinase; COGs: COG0642 Signal transduction histidine kinase; InterProIPR018060:IPR005467:IPR001789:IPR004358:IPR 003661:IPR003594:IPR000005; KEGG: zpr:ZPR_2934 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Helix-turn-helix, AraC domain; SPTR: DNA-binding response regulator/sensor histidine kinase; PFAM: Histidine kinase-, DNA gyr [...]
  
    0.560
Lbys_0729
Hypothetical protein; KEGG: fba:FIC_01814 sensory transduction histidine kinase; SPTR: Sensory transduction histidine kinase.
       0.550
Lbys_1414
KEGG: cpi:Cpin_6195 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.466
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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