Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lbys_0769Metallophosphoesterase; COGs: COG1409 phosphohydrolase; InterPro IPR004843; KEGG: pdi:BDI_1215 calcineurin superfamily phosphohydrolase; PFAM: metallophosphoesterase; SPTR: Putative uncharacterized protein; PFAM: Calcineurin-like phosphoesterase. (262 aa)    
Predicted Functional Partners:
Lbys_0770
KEGG: bth:BT_0691 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.839
Lbys_0887
Sulfatase; COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917; KEGG: dfe:Dfer_0445 sulfatase; PFAM: sulfatase; SPTR: Sulfatase; PFAM: Sulfatase.
  
     0.620
Lbys_0766
Proline dehydrogenase; InterPro IPR002872; KEGG: sli:Slin_5730 proline dehydrogenase; PFAM: Proline dehydrogenase; SPTR: Proline dehydrogenase; PFAM: Proline dehydrogenase.
  
    0.525
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.523
Lbys_0768
Hypothetical protein; KEGG: dfe:Dfer_0842 chromate transporter, chromate ion transporter (CHR) family; SPTR: Putative uncharacterized protein.
       0.517
Lbys_1754
alpha-L-rhamnosidase; InterPro IPR008902; KEGG: pdi:BDI_1319 glycoside hydrolase family protein; PFAM: alpha-L-rhamnosidase; SPTR: Glycoside hydrolase family 78; PFAM: Bacterial alpha-L-rhamnosidase.
  
 
   0.440
Lbys_2101
KEGG: dfe:Dfer_4404 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: MG2 domain.
  
     0.401
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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