Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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Score
Lbys_0773NAD(P)H dehydrogenase (quinone); COGs: COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); InterPro IPR003680; KEGG: pjd:Pjdr2_1753 NAD(P)H dehydrogenase (quinone); PFAM: NAD(P)H dehydrogenase (quinone); SPTR: Putative NADPH-quinone reductase; PFAM: Flavodoxin-like fold. (196 aa)    
Predicted Functional Partners:
Lbys_0708
NAD(P)H dehydrogenase (quinone); COGs: COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); InterPro IPR003680; KEGG: pfl:PFL_0765 quinone family NAD(P)H dehydrogenase; PFAM: NAD(P)H dehydrogenase (quinone); SPTR: Quinone family NAD(P)H dehydrogenase; PFAM: Flavodoxin-like fold.
  
  
 
0.923
Lbys_0897
NmrA family protein; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: sli:Slin_2467 NmrA family protein; SPTR: NmrA family protein; PFAM: NmrA-like family.
    
  0.901
menG
Demethylmenaquinone methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
     
 0.901
Lbys_3192
NmrA family protein; COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: hoh:Hoch_3036 NmrA family protein; SPTR: Putative uncharacterized protein; PFAM: NmrA-like family.
    
  0.901
Lbys_0772
KEGG: ppd:Ppro_2216 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.782
Lbys_0771
Oxidoreductase FAD-binding domain protein; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterProIPR001041:IPR017927:IPR001834:IPR001709:IPR 008333:IPR001433; KEGG: sli:Slin_5188 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; TIGRFAM: ferredoxin [2Fe-2S].
       0.723
Lbys_0774
Putative transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fjo:Fjoh_2842 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding domain.
 
     0.657
Lbys_2967
Sodium/hydrogen exchanger; COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: fjo:Fjoh_0578 sodium/hydrogen exchanger; PFAM: sodium/hydrogen exchanger; SPTR: Sodium/hydrogen exchanger; PFAM: Sodium/hydrogen exchanger family.
  
 
 0.449
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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