Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0779KEGG: cpi:Cpin_4614 hypothetical protein; SPTR: Putative uncharacterized protein. (127 aa)    
Predicted Functional Partners:
Lbys_0780
COGs: COG1741 Pirin-related protein; InterPro IPR012093:IPR003829:IPR008778; KEGG: cpi:Cpin_4366 pirin domain protein; PFAM: Pirin domain protein; SPTR: Pirin domain protein; PFAM: Pirin C-terminal cupin domain; Pirin; Belongs to the pirin family.
       0.773
Lbys_0781
KEGG: aci:ACIAD3581 hypothetical protein; SPTR: GNAT family acetyltransferase.
       0.773
Lbys_0777
InterPro IPR004360; KEGG: cwo:Cwoe_0965 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
 
     0.559
Lbys_0778
Transcriptional regulator, HxlR family; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: cpi:Cpin_4616 transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; SPTR: Putative uncharacterized protein; PFAM: HxlR-like helix-turn-helix.
       0.546
Lbys_0782
Hypothetical protein; COGs: COG1373 ATPase (AAA+ superfamily); KEGG: dsy:DSY3285 hypothetical protein; SPTR: AAA+ superfamily ATPase.
       0.436
Lbys_3379
COGs: COG4287 PhoPQ-activated pathogenicity-related protein; InterPro IPR009199; KEGG: sli:Slin_6614 PhoPQ-activated pathogenicity-related protein PqaA type; PFAM: PhoPQ-activated pathogenicity-related protein PqaA type; SPTR: PhoPQ-activated pathogenicity-related protein PqaA type; PFAM: PhoPQ-activated pathogenicity-related protein.
  
     0.407
Lbys_3548
YCII-related protein; InterPro IPR005545; KEGG: zpr:ZPR_3313 DGPFAETKE domain-containing protein; PFAM: YCII-related; SPTR: DGPFAETKE domain-containing protein; PFAM: YCII-related domain.
 
     0.407
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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