STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0780COGs: COG1741 Pirin-related protein; InterPro IPR012093:IPR003829:IPR008778; KEGG: cpi:Cpin_4366 pirin domain protein; PFAM: Pirin domain protein; SPTR: Pirin domain protein; PFAM: Pirin C-terminal cupin domain; Pirin; Belongs to the pirin family. (294 aa)    
Predicted Functional Partners:
Lbys_0781
KEGG: aci:ACIAD3581 hypothetical protein; SPTR: GNAT family acetyltransferase.
       0.784
Lbys_0779
KEGG: cpi:Cpin_4614 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Lbys_0830
COGs: COG1741 Pirin-related protein; InterPro IPR012093:IPR003829; KEGG: chu:CHU_2096 pirin-related protein; PFAM: Pirin domain protein; SPTR: Pirin-related protein; PFAM: Pirin; Belongs to the pirin family.
 
     0.598
Lbys_0778
Transcriptional regulator, HxlR family; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: cpi:Cpin_4616 transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; SPTR: Putative uncharacterized protein; PFAM: HxlR-like helix-turn-helix.
       0.552
Lbys_0782
Hypothetical protein; COGs: COG1373 ATPase (AAA+ superfamily); KEGG: dsy:DSY3285 hypothetical protein; SPTR: AAA+ superfamily ATPase.
       0.436
Lbys_2871
Extradiol ring-cleavage dioxygenase class III protein subunit B; COGs: COG3384 conserved hypothetical protein; InterPro IPR004183:IPR014436; KEGG: phe:Phep_4269 extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; SPTR: Extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Catalytic LigB subunit of aromatic ring-opening dioxygenase.
 
  
 0.429
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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