STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0794Hypothetical protein; InterPro IPR018134; KEGG: bfr:BF4122 hypothetical protein; SPTR: Putative MrsE protein. (260 aa)    
Predicted Functional Partners:
Lbys_0795
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sss:SSUSC84_0854 lantibiotic transport ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Potential ABC transporter; manually curated; PFAM: ABC transporter.
       0.773
Lbys_0796
COGs: COG2312 Erythromycin esterase homolog; InterPro IPR007815; KEGG: bfr:BF4124 hypothetical protein; PFAM: Erythromycin esterase; SPTR: Putative uncharacterized protein; PFAM: Erythromycin esterase.
       0.773
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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