STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Lbys_0799FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COGs: COG0492 Thioredoxin reductase; InterPro IPR000103:IPR013027; KEGG: zpr:ZPR_2200 alkyl hydroperoxide reductase, F52a subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Alkyl hydroperoxide reductase, F52a subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase. (333 aa)    
Predicted Functional Partners:
Lbys_3319
COGs: COG0450 Peroxiredoxin; InterPro IPR017936:IPR000866:IPR019479; KEGG: dfe:Dfer_5194 peroxidase; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; PRIAM: Peroxidase; SPTR: Peroxidase; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family.
  
 
 0.772
Lbys_0800
Putative transcription regulator; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: zpr:ZPR_3182 putative transcription regulator; SPTR: Probable transcription regulator; PFAM: Ferric uptake regulator family; Belongs to the Fur family.
 
   
 0.743
Lbys_0103
Rhodanese domain protein; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR017937:IPR001763:IPR013766:IPR017936; KEGG: fps:FP2000 thioredoxin family protein; PFAM: Rhodanese domain protein; Thioredoxin domain-containing protein; SMART: Rhodanese domain protein; SPTR: Thioredoxin family protein; PFAM: Thioredoxin; Rhodanese-like domain.
  
 
 0.582
Lbys_0151
InterPro IPR000594; KEGG: fjo:Fjoh_2986 UBA/ThiF-type NAD/FAD binding protein; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: UBA/THIF family NAD/FAD binding protein; PFAM: ThiF family; TIGRFAM: PRTRC system ThiF family protein.
  
  
 0.544
Lbys_0771
Oxidoreductase FAD-binding domain protein; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterProIPR001041:IPR017927:IPR001834:IPR001709:IPR 008333:IPR001433; KEGG: sli:Slin_5188 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; TIGRFAM: ferredoxin [2Fe-2S].
   
 
 0.536
Lbys_1920
Oxidoreductase FAD/NAD(P)-binding domain protein; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterProIPR006058:IPR001709:IPR001221:IPR008333:IPR 001433:IPR001041:IPR017927; KEGG: sli:Slin_5188 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain.
   
 
 0.536
Lbys_0969
Thioredoxin; COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766:IPR006662:IPR005746:IPR017936; KEGG: cpi:Cpin_7155 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin.
  
 
 0.483
Lbys_1129
Thioredoxin; COGs: COG3118 Thioredoxin domain-containing protein; InterProIPR013766:IPR006662:IPR005746:IPR017936:IPR 017937; KEGG: sli:Slin_0530 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin; Belongs to the thioredoxin family.
  
 
 0.483
Lbys_2952
Thioredoxin; COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766:IPR006662:IPR017936:IPR017937; KEGG: cpi:Cpin_7155 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin C-2; PFAM: Thioredoxin; TIGRFAM: thioredoxin.
  
 
 0.483
Lbys_3189
KEGG: sli:Slin_5833 hypothetical protein; SPTR: General stress protein; manually curated; PFAM: Protein of unknown function (DUF2847).
  
 
 0.482
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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