STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0806Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: fjo:Fjoh_2547 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family. (196 aa)    
Predicted Functional Partners:
Lbys_0802
KEGG: fjo:Fjoh_2548 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.716
Lbys_0805
Putative transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: zpr:ZPR_0736 protein containing cyclic nucleotide-binding domain; PFAM: cyclic nucleotide-binding; SPTR: Protein containing cyclic nucleotide-binding domain; PFAM: Cyclic nucleotide-binding domain.
 
     0.609
Lbys_0123
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: cpi:Cpin_6177 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Putative AraC family transcriptional regulatory protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
  
     0.524
Lbys_0801
KEGG: fjo:Fjoh_2549 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.519
Lbys_0195
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060; KEGG: cpi:Cpin_5386 transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
  
     0.463
Lbys_2558
DNA binding domain protein, excisionase family; InterPro IPR000551:IPR010093; KEGG: cyt:cce_2689 hypothetical protein; PFAM: regulatory protein MerR; SPTR: Putative uncharacterized protein; TIGRFAM: DNA binding domain protein, excisionase family; TIGRFAM: DNA binding domain, excisionase family.
  
     0.457
Lbys_1292
COGs: COG0642 Signal transduction histidine kinase; InterProIPR013767:IPR003018:IPR003661:IPR003594:IPR 001789:IPR008207:IPR005467:IPR000014:IPR000700:IPR001610:I PR004358; KEGG: dfe:Dfer_5761 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; GAF domain protein; response regulator receiver; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; GAF domai [...]
    
 
 0.444
Lbys_0503
COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467:IPR001789:IPR000014:IPR000700:IPR 008207:IPR003018:IPR013767:IPR013655:IPR013656:IPR003661:I PR003594:IPR001610:IPR004358; KEGG: fba:FIC_01779 PAS/PAC domain protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containin [...]
    
 
 0.440
Lbys_2094
KEGG: fjo:Fjoh_3287 hypothetical protein; SPTR: Hypothetical lipoprotein.
  
     0.428
Lbys_2559
KEGG: pna:Pnap_3977 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.423
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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