STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0831Two component transcriptional regulator, LytTR family; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_0588 response regulator receiver; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain; LytTr DNA-binding domain. (228 aa)    
Predicted Functional Partners:
Lbys_0832
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_0589 histidine kinase internal region; PFAM: histidine kinase internal region; SPTR: Putative two-component system sensor histidine kinase; PFAM: Histidine kinase.
 
   0.961
Lbys_2539
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_0216 histidine kinase internal region; PFAM: histidine kinase internal region; SPTR: Putative two-component system sensor protein, no kinase domain; PFAM: Histidine kinase.
 
   0.819
Lbys_2869
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: cpi:Cpin_5597 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase.
 
   0.819
Lbys_2959
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_1541 histidine kinase internal region; PFAM: histidine kinase internal region; SPTR: Signal transduction ATPase, FimS family protein; PFAM: Histidine kinase.
 
   0.819
Lbys_0295
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: phe:Phep_1842 histidine kinase internal region; PFAM: histidine kinase internal region; SPTR: Histidine kinase internal region; PFAM: Histidine kinase.
 
   0.818
Lbys_1860
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559:IPR003594; KEGG: gfo:GFO_0741 two-component system sensor histidine kinase; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase.
 
   0.818
Lbys_1999
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR003594:IPR010559; KEGG: fba:FIC_00181 sensor histidine kinase; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Possible sensor protein; PFAM: Histidine kinase; 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   0.818
Lbys_3106
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559:IPR003594; KEGG: sli:Slin_2907 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase.
 
   0.818
Lbys_3125
Signal transduction histidine kinase, LytS; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: cpi:Cpin_6407 signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase.
 
   0.817
Lbys_0963
COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: swd:Swoo_2437 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: Response regulator receiver protein; PFAM: LytTr DNA-binding domain.
  
     0.599
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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