STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0850Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: sli:Slin_3138 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain. (258 aa)    
Predicted Functional Partners:
Lbys_0849
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
     
 0.778
Lbys_0889
KEGG: sli:Slin_2427 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.625
Lbys_0851
Hypothetical protein.
       0.556
Lbys_1112
KEGG: sli:Slin_5463 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.537
Lbys_0466
KEGG: dfe:Dfer_4875 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.482
Lbys_3522
KEGG: sli:Slin_1752 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2452).
  
     0.465
Lbys_1946
InterPro IPR007139; KEGG: sli:Slin_5235 protein of unknown function DUF349; PFAM: protein of unknown function DUF349; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF349).
  
     0.415
Lbys_3023
KEGG: dfe:Dfer_4063 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.415
Lbys_0760
KEGG: dfe:Dfer_0540 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.413
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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