STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0858KEGG: pkn:PKH_145380 hypothetical protein; SPTR: Predicted protein. (260 aa)    
Predicted Functional Partners:
Lbys_0859
Efflux transporter, RND family, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fba:FIC_02403 multidrug resistance protein, AcrA/AcrE family; PFAM: secretion protein HlyD family protein; SPTR: Multidrug resistance protein, AcrA/AcrE family; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.481
Lbys_0860
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR004764:IPR000731:IPR001036; KEGG: fba:FIC_02404 AcrB/AcrD/AcrF family membrane transport protein; PFAM: acriflavin resistance protein; SPTR: Acriflavin resistance protein D; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.481
Lbys_0861
RND efflux system, outer membrane lipoprotein, NodT family; COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: zpr:ZPR_0291 OprM-like outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: OprM-like outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
       0.481
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.