STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0873COGs: COG4891 conserved hypothetical protein; KEGG: afe:Lferr_2766 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport. (149 aa)    
Predicted Functional Partners:
Lbys_0874
KEGG: phe:Phep_0720 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.615
Lbys_0875
Putative transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: dfe:Dfer_1119 putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: Putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain.
 
     0.561
Lbys_0876
COGs: COG2049 Allophanate hydrolase subunit 1; InterPro IPR010016:IPR003833; KEGG: hin:HI1731 hypothetical protein; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; SPTR: Putative uncharacterized protein; PFAM: Allophanate hydrolase subunit 1; TIGRFAM: conserved hypothetical protein TIGR00370.
       0.471
Lbys_0877
Protein of unknown function DUF255; COGs: COG1331 Highly conserved protein containing a thioredoxin domain; KEGG: dfe:Dfer_0027 protein of unknown function DUF255; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255.
       0.471
Lbys_0878
KEGG: dfe:Dfer_0028 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.471
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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