STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0877Protein of unknown function DUF255; COGs: COG1331 Highly conserved protein containing a thioredoxin domain; KEGG: dfe:Dfer_0027 protein of unknown function DUF255; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255. (644 aa)    
Predicted Functional Partners:
Lbys_0878
KEGG: dfe:Dfer_0028 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.793
Lbys_0875
Putative transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: dfe:Dfer_1119 putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: Putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain.
       0.773
Lbys_0876
COGs: COG2049 Allophanate hydrolase subunit 1; InterPro IPR010016:IPR003833; KEGG: hin:HI1731 hypothetical protein; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; SPTR: Putative uncharacterized protein; PFAM: Allophanate hydrolase subunit 1; TIGRFAM: conserved hypothetical protein TIGR00370.
       0.773
Lbys_2254
Cellulase; InterPro IPR001547; KEGG: scl:sce4910 cellulase; PFAM: glycoside hydrolase family 5; PRIAM: Cellulase; SPTR: Cellulase; PFAM: Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
   0.605
Lbys_2950
Glycoside hydrolase family 5; COGs: COG2730 Endoglucanase; InterPro IPR001547; KEGG: fjo:Fjoh_0774 glycoside hydrolase family protein; PFAM: glycoside hydrolase family 5; SPTR: Putative glycosyl hydrolase family5; PFAM: Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
   0.605
Lbys_0874
KEGG: phe:Phep_0720 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.581
Lbys_0879
KEGG: dfe:Dfer_0029 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.579
Lbys_0880
Transcriptional regulator, XRE family; COGs: COG3800 transcriptional regulator protein; InterPro IPR001387:IPR010359; KEGG: sli:Slin_2021 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix; Domain of unknown function (DUF955).
       0.576
Lbys_0873
COGs: COG4891 conserved hypothetical protein; KEGG: afe:Lferr_2766 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport.
       0.471
Lbys_0286
Esterase; InterPro IPR000801; KEGG: aca:ACP_2491 putative lipoprotein; PFAM: esterase; SPTR: Putative secreted protein; PFAM: Putative esterase.
  
 
   0.409
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.