STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0889KEGG: sli:Slin_2427 hypothetical protein; SPTR: Putative uncharacterized protein. (175 aa)    
Predicted Functional Partners:
Lbys_0888
COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: dfe:Dfer_0446 glutamine synthetase catalytic region; PFAM: glutamine synthetase catalytic region; SPTR: Glutamine synthetase catalytic region; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal.
       0.779
Lbys_0890
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.776
Lbys_0891
KEGG: sli:Slin_1353 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.776
Lbys_0760
KEGG: dfe:Dfer_0540 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.763
Lbys_0466
KEGG: dfe:Dfer_4875 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.760
Lbys_3023
KEGG: dfe:Dfer_4063 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.760
Lbys_1209
KEGG: sli:Slin_0951 N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase.
  
     0.744
Lbys_2285
Hypothetical protein; InterPro IPR013026:IPR022272; KEGG: dfe:Dfer_3762 tetratricopeptide domain protein; SPTR: Tetratricopeptide domain protein.
  
     0.739
Lbys_0662
KEGG: dfe:Dfer_4263 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.736
Lbys_1432
InterPro IPR007139; KEGG: sli:Slin_2892 protein of unknown function DUF349; PFAM: protein of unknown function DUF349; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF349).
  
     0.734
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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