STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0899COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_1720 TonB-dependent receptor plug; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain. (733 aa)    
Predicted Functional Partners:
Lbys_0716
Transcription activator effector binding protein; COGs: COG3708 conserved hypothetical protein; InterPro IPR010499; KEGG: chu:CHU_2283 hypothetical protein; PFAM: transcription activator effector binding; SPTR: Putative uncharacterized protein; PFAM: Bacterial transcription activator, effector binding domain.
  
     0.467
Lbys_1127
AIG2 family protein; COGs: COG2105 conserved hypothetical protein; InterPro IPR009288; KEGG: aeh:Mlg_0302 hypothetical protein; PFAM: AIG2 family protein; SPTR: Putative uncharacterized protein; PFAM: AIG2-like family.
  
     0.456
Lbys_1039
KEGG: cvi:CV_2861 hypothetical protein; SPTR: Ketosteroid isomerase-related protein-like protein.
  
     0.445
Lbys_0929
KEGG: sli:Slin_1995 hypothetical protein; SPTR: Putative uncharacterized protein.
   
   0.401
Lbys_1195
TonB family protein; InterPro IPR008756:IPR006260; KEGG: sli:Slin_6187 TonB family protein; PFAM: peptidase M56 BlaR1; TonB domain; SPTR: Putative uncharacterized protein; TIGRFAM: TonB family protein; PFAM: BlaR1 peptidase M56; Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
  
   0.401
Lbys_1959
TonB family protein; InterPro IPR006260:IPR019734:IPR013026; KEGG: cpi:Cpin_6351 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
   
   0.401
Lbys_2179
Hypothetical protein; InterPro IPR001412; KEGG: sli:Slin_5618 hypothetical protein; SPTR: Putative uncharacterized protein.
   
   0.401
Lbys_3214
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
   0.401
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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