Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lbys_0907KEGG: fjo:Fjoh_2988 hypothetical protein; SPTR: Putative uncharacterized protein. (152 aa)    
Predicted Functional Partners:
Lbys_0906
Transcriptional regulator, ArsR family; InterPro IPR001845; KEGG: fjo:Fjoh_2987 regulatory protein, ArsR; SMART: regulatory protein ArsR; SPTR: ArsR family regulatory protein; PFAM: Bacterial regulatory protein, arsR family.
       0.786
Lbys_0908
GCN5-related N-acetyltransferase; COGs: COG1247 Sortase and related acyltransferase; InterPro IPR000182; KEGG: fjo:Fjoh_3080 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Possible phosphinothricin acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
       0.786
Lbys_2482
KEGG: fjo:Fjoh_2990 protein tyrosine phosphatase; SPTR: Protein tyrosine phosphatase.
 
     0.729
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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