STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0959Cyclic nucleotide-binding protein; InterPro IPR000595; KEGG: chu:CHU_1452 cyclic nucleotide binding regulatory protein; PFAM: cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding domain. (192 aa)    
Predicted Functional Partners:
Lbys_0957
KEGG: chu:CHU_1450 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.711
Lbys_0958
KEGG: dfe:Dfer_0778 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.559
Lbys_1292
COGs: COG0642 Signal transduction histidine kinase; InterProIPR013767:IPR003018:IPR003661:IPR003594:IPR 001789:IPR008207:IPR005467:IPR000014:IPR000700:IPR001610:I PR004358; KEGG: dfe:Dfer_5761 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; GAF domain protein; response regulator receiver; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; GAF domai [...]
  
 
 0.521
Lbys_0962
Intradiol ring-cleavage dioxygenase; COGs: COG3485 Protocatechuate 3 4-dioxygenase beta subunit; InterPro IPR000627; KEGG: rbi:RB2501_01006 hypothetical protein; PFAM: intradiol ring-cleavage dioxygenase; SPTR: Putative uncharacterized protein; PFAM: Dioxygenase.
 
     0.484
Lbys_0503
COGs: COG0642 Signal transduction histidine kinase; InterProIPR005467:IPR001789:IPR000014:IPR000700:IPR 008207:IPR003018:IPR013767:IPR013655:IPR013656:IPR003661:I PR003594:IPR001610:IPR004358; KEGG: fba:FIC_01779 PAS/PAC domain protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containin [...]
  
 
 0.455
Lbys_1798
COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001789:IPR001054; KEGG: dfe:Dfer_1110 adenylate/guanylate cyclase; PFAM: response regulator receiver; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: response regulator receiver; adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylate/guanylate cyclase; PFAM: Adenylate and Guanylate cyclase catalytic domain; Response regulator receiver domain.
  
 0.443
Lbys_0960
KEGG: chu:CHU_1725 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.423
Lbys_0961
KEGG: lbl:LBL_1294 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SnoaL-like polyketide cyclase.
       0.423
Lbys_2255
KEGG: phe:Phep_1935 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.404
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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