STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0969Thioredoxin; COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766:IPR006662:IPR005746:IPR017936; KEGG: cpi:Cpin_7155 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin. (97 aa)    
Predicted Functional Partners:
Lbys_0970
KEGG: bfs:BF2692 hypothetical protein; SPTR: Putative uncharacterized protein.
     
 0.790
Lbys_0971
KEGG: sli:Slin_6447 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
       0.788
Lbys_0972
Rhodanese domain protein; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: pgi:PG1570 rhodanese-like domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Rhodanese family domain protein; PFAM: Rhodanese-like domain.
     
 0.633
Lbys_0968
Protein of unknown function DUF395 YeeE/YedE; InterPro IPR007272; KEGG: fba:FIC_01581 probable transmembrane protein; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: Protein of hypothetical function DUF395, YeeE/YedE; PFAM: YeeE/YedE family (DUF395).
       0.571
Lbys_1281
COGs: COG0492 Thioredoxin reductase; InterPro IPR013027:IPR005982:IPR000103; KEGG: chu:CHU_1778 thioredoxin-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin-disulfide reductase; TIGRFAM: thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase.
 
 
 0.569
fusA
Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...]
    
 
 0.559
Lbys_0973
Rhodanese domain protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: fba:FIC_01582 metallo-beta-lactamase superfamily protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Metallo-beta-lactamase superfamily protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain.
     
 0.517
groL
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.484
Lbys_0799
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COGs: COG0492 Thioredoxin reductase; InterPro IPR000103:IPR013027; KEGG: zpr:ZPR_2200 alkyl hydroperoxide reductase, F52a subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Alkyl hydroperoxide reductase, F52a subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.483
Lbys_1543
Glutamate synthase (NADH) large subunit; COGs: COG0069 Glutamate synthase domain 2; InterProIPR000583:IPR006982:IPR002932:IPR002489:IPR 017932; KEGG: dfe:Dfer_5479 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein; PRIAM: Glutamate synthase (ferredoxin); SPTR: Glutamate synthase (Ferredoxin); PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
   
 
 0.483
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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