STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0971KEGG: sli:Slin_6447 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated. (77 aa)    
Predicted Functional Partners:
Lbys_0970
KEGG: bfs:BF2692 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.818
Lbys_0969
Thioredoxin; COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766:IPR006662:IPR005746:IPR017936; KEGG: cpi:Cpin_7155 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin.
       0.790
Lbys_0972
Rhodanese domain protein; COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: pgi:PG1570 rhodanese-like domain-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Rhodanese family domain protein; PFAM: Rhodanese-like domain.
       0.685
Lbys_0968
Protein of unknown function DUF395 YeeE/YedE; InterPro IPR007272; KEGG: fba:FIC_01581 probable transmembrane protein; PFAM: protein of unknown function DUF395 YeeE/YedE; SPTR: Protein of hypothetical function DUF395, YeeE/YedE; PFAM: YeeE/YedE family (DUF395).
       0.562
Lbys_0973
Rhodanese domain protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: fba:FIC_01582 metallo-beta-lactamase superfamily protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Metallo-beta-lactamase superfamily protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain.
       0.478
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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