STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_0980Hypothetical protein. (44 aa)    
Predicted Functional Partners:
Lbys_0981
Esterase; COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: sfr:Sfri_1658 putative esterase; PFAM: esterase; SPTR: Putative uncharacterized protein; PFAM: Putative esterase.
       0.773
Lbys_0982
Transposase; InterPro IPR007069:IPR018060; KEGG: fba:FIC_01214 transposase; PFAM: transposase; SMART: Helix-turn-helix, AraC domain; SPTR: Transposase; PFAM: Putative transposase; Belongs to the 'phage' integrase family.
       0.455
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.