Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_1002KEGG: sli:Slin_1383 hypothetical protein; SPTR: Lipoprotein. (450 aa)    
Predicted Functional Partners:
Lbys_1003
KEGG: sli:Slin_1374 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.814
Lbys_1004
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.773
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.773
Lbys_1706
InterPro IPR005181; KEGG: sli:Slin_5096 hypothetical protein; PFAM: protein of unknown function DUF303 acetylesterase; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF303).
  
     0.600
Lbys_3217
InterPro IPR019734:IPR013026; KEGG: dfe:Dfer_4061 tetratricopeptide TPR_2 repeat protein; SPTR: Tetratricopeptide TPR_2 repeat protein.
  
     0.581
Lbys_1582
Endonuclease/exonuclease/phosphatase; InterPro IPR005135; KEGG: dfe:Dfer_0035 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family.
  
     0.535
Lbys_3317
Hypothetical protein; InterPro IPR017936; KEGG: sli:Slin_1362 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function, DUF255.
  
     0.529
Lbys_3316
Thioredoxin domain-containing protein; InterPro IPR017936:IPR013766; KEGG: sli:Slin_1362 hypothetical protein; PFAM: Thioredoxin domain-containing protein; SPTR: Putative uncharacterized protein; PFAM: Thioredoxin.
  
     0.518
Lbys_0442
Glycosyl transferase family 39; COGs: COG5305 membrane protein; InterPro IPR003342; KEGG: sli:Slin_2543 membrane protein-like protein; PFAM: glycosyl transferase family 39; SPTR: Membrane protein-like protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.517
Lbys_0896
InterPro IPR019734:IPR013026:IPR001440; KEGG: dfe:Dfer_1030 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat-containing protein.
  
     0.503
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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