STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1016Nucleoside:proton symporter; InterPro IPR020480; KEGG: zpr:ZPR_2440 nucleoside:proton symporter; SPTR: Nucleoside:H+ symporter; PFAM: Nucleoside H+ symporter; TIGRFAM: nucleoside transporter. (410 aa)    
Predicted Functional Partners:
Lbys_1767
Xylose isomerase domain-containing protein TIM barrel; COGs: COG3622 Hydroxypyruvate isomerase; InterPro IPR012307; KEGG: sli:Slin_3461 xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Xylose isomerase domain protein TIM barrel; PFAM: Xylose isomerase-like TIM barrel.
 
     0.765
Lbys_3008
Protein of unknown function DUF1080; InterPro IPR010496; KEGG: zpr:ZPR_1939 putative multi-domain protein; PFAM: protein of unknown function DUF1080; SPTR: Putative multi-domain protein; PFAM: Domain of Unknown Function (DUF1080).
 
     0.690
Lbys_3311
Glucose-methanol-choline oxidoreductase; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: dfe:Dfer_2494 glucose-methanol-choline oxidoreductase; PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; PFAM: GMC oxidoreductase.
 
     0.626
Lbys_3312
KEGG: dfe:Dfer_2493 twin-arginine translocation pathway signal; SPTR: Twin-arginine translocation pathway signal.
 
     0.623
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.602
Lbys_3519
Glucose-methanol-choline oxidoreductase; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: dfe:Dfer_2494 glucose-methanol-choline oxidoreductase; PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; PFAM: GMC oxidoreductase.
 
     0.599
Lbys_1014
Translation factor SUA5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.592
Lbys_2706
FAD dependent oxidoreductase; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076; KEGG: sli:Slin_1891 glucose-methanol-choline oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Glucose-methanol-choline oxidoreductase; PFAM: GMC oxidoreductase.
 
     0.585
Lbys_0664
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311:IPR017909:IPR000683; KEGG: dfe:Dfer_4556 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
     0.561
Lbys_2995
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR006311; KEGG: rbi:RB2501_09095 putative dehydrogenase-like protein; PFAM: oxidoreductase domain protein; SPTR: Putative dehydrogenase-like protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain.
 
     0.527
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.