STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1036IS66 Orf2 family protein; InterPro IPR008878; KEGG: zpr:ZPR_3984 transposase orf1, IS66 family protein; PFAM: IS66 Orf2 family protein; SPTR: Transposition helper protein; PFAM: IS66 Orf2 like protein. (84 aa)    
Predicted Functional Partners:
Lbys_2230
Transposase; COGs: COG3436 Transposase and inactivated derivatives; KEGG: zpr:ZPR_3418 transposase; SPTR: Transposase; PFAM: Transposase IS66 family.
 
     0.780
Lbys_1035
KEGG: dal:Dalk_5240 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.776
Lbys_1037
KEGG: tad:TRIADDRAFT_10277 hypothetical protein.
       0.693
Lbys_1034
Glyoxalase/bleomycin resistance protein/dioxygenase; COGs: COG3607 lactoylglutathione lyase; InterPro IPR004360; KEGG: aas:Aasi_0443 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase.
       0.431
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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