STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1066KEGG: fps:FP2174 hypothetical protein; SPTR: Putative uncharacterized protein. (93 aa)    
Predicted Functional Partners:
Lbys_1065
Virulence-associated E family protein; COGs: COG5545 P-loop ATPase and inactivated derivatives; InterPro IPR014907:IPR007936; KEGG: fps:FP2173 hypothetical protein; PFAM: VirE; virulence-associated E family protein; SPTR: Putative uncharacterized protein; PFAM: VirE N-terminal domain; Virulence-associated protein E.
 
     0.879
Lbys_0155
KEGG: bfs:BF1794 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: DNA binding domain, excisionase family.
  
     0.768
Lbys_1091
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: cat:CA2559_00445 tyrosine type site-specific recombinase; PFAM: integrase family protein; SPTR: Tyrosine type site-specific recombinase; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
 
   
 0.746
Lbys_0173
COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: fjo:Fjoh_3016 chromosome partitioning ATPase; SPTR: Protein found in conjugate transposon; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
     0.739
Lbys_0166
KEGG: fjo:Fjoh_3003 hypothetical protein; SPTR: Conserved protein found in conjugate transposon TraI.
  
     0.683
Lbys_0161
KEGG: fjo:Fjoh_3000 hypothetical protein; SPTR: Conserved protein found in conjugate transposon TraM; PFAM: Protein of unknown function (DUF3714); TIGRFAM: Bacteroides conjugative transposon TraM protein.
  
     0.662
Lbys_0165
InterPro IPR012424; KEGG: fjo:Fjoh_3002 TraJ family protein conjugative transposon; PFAM: TraJ family protein conjugative transposon; SPTR: TraJ family protein conjugative transposon; PFAM: Homologues of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein.
 
     0.629
Lbys_0188
Tetracycline regulation of excision, RteC; InterPro IPR018534; KEGG: fjo:Fjoh_3024 hypothetical protein; PFAM: Tetracycline regulation of excision, RteC; SPTR: Regulatory protein RteC family protein; PFAM: RteC protein.
 
     0.608
Lbys_0160
KEGG: pgn:PGN_1282 conjugate transposon protein TraN; SPTR: Conjugate transposon TraN family protein; TIGRFAM: Bacteroides conjugative transposon TraN protein.
  
     0.547
Lbys_1067
KEGG: fps:FP2176 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.542
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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