STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1071KEGG: cpi:Cpin_0187 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: SnoaL-like polyketide cyclase. (116 aa)    
Predicted Functional Partners:
Lbys_1074
Thioesterase superfamily protein; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: mag:amb3601 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: Phenylacetic acid degradation protein paai; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1.
 
     0.808
Lbys_1069
KEGG: fjo:Fjoh_2482 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1572).
 
     0.804
Lbys_1068
InterPro IPR013096; KEGG: bha:BH0377 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Cupin domain.
 
     0.797
Lbys_1070
COGs: COG3911 ATPase; KEGG: zpr:ZPR_0715 P-loop containing nucleoside triphosphate hydrolase; SPTR: ATPase-like protein; PFAM: Predicted ATPase of the ABC class.
       0.773
Lbys_1072
DinB family protein; InterPro IPR007837:IPR007087; KEGG: gau:GAU_3357 hypothetical protein; PFAM: DinB family protein; SPTR: Putative uncharacterized protein; PFAM: DinB family.
       0.773
Lbys_1067
KEGG: fps:FP2176 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.746
Lbys_1073
KEGG: bce:BC4619 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.745
Lbys_1076
KEGG: fba:FIC_01415 hypothetical protein; SPTR: Metal-dependent hydrolase; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain.
  
    0.745
Lbys_1075
InterPro IPR000182; KEGG: phe:Phep_1633 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
       0.742
Lbys_1077
COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544:IPR005786; KEGG: dfe:Dfer_3303 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II.
       0.736
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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