STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1256COGs: COG1741 Pirin-related protein; InterPro IPR003829:IPR008778:IPR012093; KEGG: fjo:Fjoh_3490 pirin domain-containing protein; PFAM: Pirin domain protein; SPTR: Pirin domain protein; PFAM: Pirin C-terminal cupin domain; Pirin; Belongs to the pirin family. (296 aa)    
Predicted Functional Partners:
Lbys_1257
Succinate CoA transferase; COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR003702:IPR017821; KEGG: bba:Bd1620 acetyl-CoA hydrolase/transferase family protein; PFAM: acetyl-CoA hydrolase/transferase; PRIAM: Acetyl-CoA hydrolase; SPTR: Acetyl-CoA hydrolase/transferase family protein; TIGRFAM: succinate CoA transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; Citrate lyase, alpha subunit (CitF); TIGRFAM: succinate CoA transferases.
       0.639
Lbys_2871
Extradiol ring-cleavage dioxygenase class III protein subunit B; COGs: COG3384 conserved hypothetical protein; InterPro IPR004183:IPR014436; KEGG: phe:Phep_4269 extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; SPTR: Extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Catalytic LigB subunit of aromatic ring-opening dioxygenase.
 
  
 0.455
Lbys_0947
COGs: COG1741 Pirin-related protein; KEGG: ebi:EbC_pEb10200330 pirin family protein; SPTR: Pirin domain protein; PFAM: Pirin; Belongs to the pirin family.
 
     0.451
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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