STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1266COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: dfe:Dfer_2903 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: Na+/solute symporter; PFAM: Sodium:solute symporter family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (489 aa)    
Predicted Functional Partners:
Lbys_2747
COGs: COG3876 conserved hypothetical protein; InterPro IPR018247:IPR008302; KEGG: cpi:Cpin_2120 hypothetical protein; PFAM: Uncharacterised conserved protein UCP016719; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1343).
     0.867
Lbys_0766
Proline dehydrogenase; InterPro IPR002872; KEGG: sli:Slin_5730 proline dehydrogenase; PFAM: Proline dehydrogenase; SPTR: Proline dehydrogenase; PFAM: Proline dehydrogenase.
  
  
 0.732
Lbys_2944
SSS sodium solute transporter superfamily; COGs: COG4146 symporter; InterPro IPR001734:IPR019900; KEGG: phe:Phep_1152 SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; SPTR: SSS family solute/sodium (Na+) symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.696
Lbys_1265
InterPro IPR003769; KEGG: sli:Slin_1599 ATP-dependent Clp protease adaptor protein ClpS; PFAM: ATP-dependent Clp protease adaptor protein ClpS; SPTR: ATP-dependent Clp protease adaptor protein ClpS; PFAM: ATP-dependent Clp protease adaptor protein ClpS; Belongs to the ClpS family.
 
     0.653
Lbys_0016
SSS sodium solute transporter superfamily; COGs: COG4146 symporter; InterPro IPR019900:IPR001734; KEGG: plu:plu1803 putative symporter YidK; PFAM: Na+/solute symporter; SPTR: Putative uncharacterized protein; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.630
Lbys_3353
KEGG: dfe:Dfer_3564 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.590
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
       0.582
Lbys_1263
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
       0.520
Lbys_1726
COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: sli:Slin_3227 uroporphyrinogen III synthase HEM4; PFAM: Uroporphyrinogen III synthase HEM4; SPTR: Possible uroporphyrinogen-III synthase; PFAM: Uroporphyrinogen-III synthase HemD.
  
     0.509
Lbys_1267
Protein of unknown function DUF323; COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: phe:Phep_1133 protein of unknown function DUF323; PFAM: protein of unknown function DUF323; SPTR: Protein of hypothetical function DUF323; PFAM: Formylglycine-generating sulfatase enzyme.
       0.507
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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