STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1296COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: dfe:Dfer_4450 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1 membrane alanine aminopeptidase; SPTR: Peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase family M1. (542 aa)    
Predicted Functional Partners:
Lbys_1295
KEGG: phe:Phep_0632 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: ubiE/COQ5 methyltransferase family.
  
    0.776
Lbys_1297
Glucose/galactose transporter; COGs: COG0738 Fucose permease; InterPro IPR011701:IPR005964; KEGG: dfe:Dfer_0466 glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Glucose/galactose transporter; TIGRFAM: glucose/galactose transporter; PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter.
       0.773
Lbys_3347
Protein of unknown function DUF2480; InterPro IPR018914; KEGG: sli:Slin_4879 hypothetical protein; PFAM: Protein of unknown function DUF2480; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2480).
  
     0.590
Lbys_1299
CMP/dCMP deaminase zinc-binding protein; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
    
  0.582
Lbys_1294
Peptidoglycan-binding lysin domain; COGs: COG1652 Uncharacterized protein containing LysM domain; InterPro IPR007055:IPR018392:IPR002482; KEGG: dfe:Dfer_2006 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; transport-associated; SMART: Peptidoglycan-binding LysM; SPTR: Peptidoglycan-binding LysM; PFAM: Putative phospholipid-binding domain; LysM domain.
       0.557
Lbys_1298
COGs: COG2820 Uridine phosphorylase; InterPro IPR000845; KEGG: coc:Coch_1827 purine or other phosphorylase family 1; PFAM: purine or other phosphorylase family 1; SPTR: Purine or other phosphorylase family 1; PFAM: Phosphorylase superfamily.
       0.539
Lbys_1293
KEGG: sli:Slin_3529 transglycosylase-associated protein; SPTR: Transglycosylase-associated protein; PFAM: Transglycosylase associated protein.
  
    0.463
Lbys_3210
Peptidase M28; COGs: COG2234 aminopeptidase; InterPro IPR018247:IPR007484; KEGG: dfe:Dfer_3397 peptidase M28; PFAM: peptidase M28; SPTR: Peptidase M28; PFAM: PA domain; Peptidase family M28.
  
 
 
 0.450
Lbys_3328
COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: sli:Slin_6044 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1 membrane alanine aminopeptidase; SPTR: Peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase family M1.
  
     0.410
fusA
Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...]
   
 
 0.402
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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