Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lbys_1306Protein of unknown function DUF477; COGs: COG3762 membrane protein; InterPro IPR007621; KEGG: dfe:Dfer_4335 protein of unknown function DUF477; PFAM: protein of unknown function DUF477; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF477). (142 aa)    
Predicted Functional Partners:
Lbys_1307
Protein of unknown function DUF477; COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: sli:Slin_5849 protein of unknown function DUF477; PFAM: protein of unknown function DUF477; SPTR: Putative uncharacterized protein; manually curated; PFAM: Domain of unknown function (DUF477).
 
     0.957
Lbys_1305
LemA family protein; COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: sli:Slin_5847 LemA family protein; PFAM: LemA family protein; SPTR: LemA family protein; PFAM: LemA family.
 
     0.921
rpsU
SSU ribosomal protein S21P; InterPro IPR001911:IPR018278; KEGG: dfe:Dfer_3927 ribosomal protein S21; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.578
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.453
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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