STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1409KEGG: sli:Slin_2904 hypothetical protein; SPTR: Putative uncharacterized protein. (80 aa)    
Predicted Functional Partners:
Lbys_1407
Sodium/proton antiporter, CPA1 family; InterPro IPR006153; KEGG: chu:CHU_0626 Na(+)/H(+) exchanger family protein; PFAM: sodium/hydrogen exchanger; SPTR: Na(+)/H(+) exchanger family protein; PFAM: Sodium/hydrogen exchanger family; TC 2.A.36.
       0.773
Lbys_1408
COGs: COG1820 N-acetylglucosamine-6-phosphate deacetylase; InterPro IPR006680:IPR003764; KEGG: dfe:Dfer_2786 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; PRIAM: N-acetylglucosamine-6-phosphate deacetylase; SPTR: N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase.
       0.773
Lbys_2079
KEGG: cpi:Cpin_7179 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: DinB family.
  
     0.595
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.527
Lbys_1406
COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183:IPR005730; KEGG: dfe:Dfer_1153 carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Carboxynorspermidine decarboxylase; TIGRFAM: carboxynorspermidine decarboxylase; manually curated; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; TIGRFAM: carboxynorspermidine decarboxylase.
       0.527
Lbys_1799
COGs: COG4993 Glucose dehydrogenase; InterProIPR019551:IPR002372:IPR019556:IPR003088:IPR 018391:IPR009056; KEGG: sli:Slin_2450 PQQ-dependent enzyme-like protein; PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone repeat-containing protein; cytochrome c class I; PRIAM: Quinoprotein glucose dehydrogenase; SPTR: PQQ-dependent enzyme-like protein; PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; Pyrrolo-quinoline quinone coenzyme C-terminus; PQQ enzyme repeat.
  
     0.514
Lbys_0636
5'(3')-deoxyribonucleotidase; COGs: COG4502 conserved hypothetical protein; KEGG: rbi:RB2501_10642 5'(3')-deoxyribonucleotidase; SPTR: 5'(3')-deoxyribonucleotidase; PFAM: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C).
  
     0.510
Lbys_2889
Phospholipase C, phosphocholine-specific; COGs: COG3511 Phospholipase C; InterPro IPR007312:IPR017909:IPR006311:IPR017767; KEGG: dfe:Dfer_1225 phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; PRIAM: Phospholipase C; SPTR: Phospholipase C, phosphocholine-specific; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: Phosphoesterase family; TIGRFAM: phospholipase C, phosphocholine-specific, Pseudomonas-type; Tat (twin-arginine translocation) pathway signal sequence.
  
     0.403
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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