STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1420Magnesium transporter; Acts as a magnesium transporter. (452 aa)    
Predicted Functional Partners:
dtd
D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.
  
    0.799
Lbys_1219
KEGG: dfe:Dfer_3149 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Nucleotidyl transferase.
      0.589
Lbys_1421
Alpha-1,2-mannosidase; COGs: COG3537 Putative alpha-1 2-mannosidase; InterPro IPR012939:IPR005887; KEGG: bth:BT_3527 alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; SPTR: Putative uncharacterized protein; TIGRFAM: alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase, putative.
       0.576
Lbys_1422
Esterase/lipase-like protein; COGs: COG0657 Esterase/lipase; KEGG: dfe:Dfer_3062 esterase/lipase-like protein; SPTR: Esterase/lipase-like protein; PFAM: alpha/beta hydrolase fold.
       0.576
Lbys_0113
DNA-O6-methylguanine--protein-cysteine S-methyltransferase; COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR001497:IPR014048:IPR000005:IPR018060; KEGG: fjo:Fjoh_1575 methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguani [...]
     0.406
Lbys_1423
Peptidase S9B dipeptidylpeptidase IV domain protein; COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: zpr:ZPR_1379 prolyl oligopeptidase family; PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; SPTR: Prolyl oligopeptidase family; PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region.
       0.405
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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