STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1424KEGG: cpi:Cpin_3583 hypothetical protein; SPTR: Putative uncharacterized protein. (146 aa)    
Predicted Functional Partners:
Lbys_1425
Protein of unknown function DUF2196; COGs: COG4895 conserved hypothetical protein; InterPro IPR019240; KEGG: ant:Arnit_2599 hypothetical protein; PFAM: Protein of unknown function DUF2196; SPTR: Putative uncharacterized protein; TIGRFAM: Protein of unknown function DUF2196; PFAM: Uncharacterized conserved protein (DUF2196); TIGRFAM: conserved hypothetical protein.
       0.773
lolD-2
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
       0.519
Lbys_1427
Protein of unknown function DUF214; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838:IPR017441; KEGG: fps:FP0922 lipoprotein releasing system transmembrane protein LolC; PFAM: protein of unknown function DUF214; SPTR: Lipoprotein releasing system transmembrane protein LolC; PFAM: Predicted permease.
       0.519
Lbys_1428
Efflux transporter, RND family, MFP subunit; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: fps:FP0923 membrane fusion efflux protein precursor; SPTR: Probable membrane fusion efflux protein; TIGRFAM: efflux transporter, RND family, MFP subunit; manually curated; TIGRFAM: RND family efflux transporter, MFP subunit.
       0.519
Lbys_1429
COGs: COG1538 Outer membrane protein; KEGG: dfe:Dfer_4162 outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein.
       0.519
Lbys_2448
InterPro IPR000834; KEGG: sli:Slin_2367 peptidase M14, carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SPTR: Putative uncharacterized protein; PFAM: Zinc carboxypeptidase.
  
     0.492
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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