STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1484Hypothetical protein; InterPro IPR006162; KEGG: dfe:Dfer_1757 hypothetical protein; SPTR: Putative uncharacterized protein. (326 aa)    
Predicted Functional Partners:
Lbys_0082
KEGG: sli:Slin_0566 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.770
Lbys_3480
TonB-dependent receptor plug; InterPro IPR012910; KEGG: dfe:Dfer_2367 hypothetical protein; PFAM: TonB-dependent receptor plug; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain.
  
     0.697
Lbys_0470
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: sli:Slin_0240 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein, putative; PFAM: Radical SAM superfamily.
  
     0.665
Lbys_1458
KEGG: sli:Slin_5160 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
     0.650
Lbys_3390
KEGG: sli:Slin_0567 hypothetical protein; SPTR: Lipoprotein, putative.
  
     0.641
Lbys_0250
KEGG: dfe:Dfer_0200 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: S1/P1 Nuclease.
  
     0.600
Lbys_1728
KEGG: cpi:Cpin_0536 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.573
Lbys_3483
Hypothetical protein; KEGG: dfe:Dfer_5750 surface antigen (D15); SPTR: Surface antigen (D15).
  
     0.537
Lbys_3155
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827; KEGG: dfe:Dfer_3223 surface antigen variable number repeat protein; PFAM: surface antigen variable number repeat-containing protein; SPTR: Surface antigen variable number repeat protein; PFAM: Surface antigen variable number repeat.
  
     0.531
Lbys_2702
KEGG: dfe:Dfer_2950 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.524
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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