STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1502ABC-2 type transporter; InterPro IPR013525:IPR000412; KEGG: fjo:Fjoh_1095 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter, permease component; PFAM: ABC-2 type transporter. (429 aa)    
Predicted Functional Partners:
Lbys_1503
ABC transporter related protein; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: fps:FP2272 ABC transporter ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Probable ABC-type transport system, ATPase component; PFAM: ABC transporter.
 
  
 0.967
Lbys_1504
KEGG: fjo:Fjoh_1097 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.953
Lbys_1505
KEGG: fjo:Fjoh_1098 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.953
Lbys_1508
COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013747; KEGG: fjo:Fjoh_1102 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase III protein DarB; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal.
 
     0.951
Lbys_1509
KEGG: fjo:Fjoh_1103 hypothetical protein; SPTR: Dialkylrecorsinol condensing enzyme DarA.
 
     0.950
Lbys_1506
KEGG: fps:FP2277 flexirubin-type pigment biosynthesis acyl carrier protein DarC1; SPTR: Probable acyl carrier protein involved in flexirubin-type pigment biosynthesis DarC2.
 
     0.949
Lbys_1507
KEGG: fjo:Fjoh_1101 hypothetical protein; SPTR: Possible beta hydroxy acyl ACP dehydratase.
 
     0.945
Lbys_1501
Thioesterase superfamily protein; COGs: COG0824 thioesterase; InterPro IPR006683:IPR008272; KEGG: fjo:Fjoh_1094 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Thioesterase superfamily protein; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family.
 
   
 0.828
Lbys_1479
Phospholipid/glycerol acyltransferase; COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR002123; KEGG: fjo:Fjoh_1078 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Probable bifunctional phospholipid/glycerol acyltransferase and transporter; PFAM: Acyltransferase; MMPL family; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases.
 
     0.784
Lbys_1476
Hypothetical protein; InterPro IPR009081; KEGG: fjo:Fjoh_1105 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein.
 
  
 0.782
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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