STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1558TonB-dependent receptor plug; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3052 TonB-dependent receptor plug; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative TonB-dependent outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain. (749 aa)    
Predicted Functional Partners:
Lbys_1556
COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712:IPR003594; KEGG: fjo:Fjoh_4738 histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase; 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.547
Lbys_1557
Two component transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: fjo:Fjoh_4735 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: LuxR family response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family.
       0.547
Lbys_1559
Protein of unknown function DUF107; COGs: COG1585 Membrane protein implicated in regulation of membrane protease activity; InterPro IPR002810; KEGG: dfe:Dfer_3005 protein of unknown function DUF107; PFAM: protein of unknown function DUF107; SPTR: Putative uncharacterized protein; PFAM: NfeD-like.
  
    0.534
Lbys_1560
SPFH domain, Band 7 family protein; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107:IPR001972; KEGG: dfe:Dfer_3004 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: Band 7 protein; PFAM: SPFH domain / Band 7 family.
       0.528
Lbys_3480
TonB-dependent receptor plug; InterPro IPR012910; KEGG: dfe:Dfer_2367 hypothetical protein; PFAM: TonB-dependent receptor plug; SPTR: Putative uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain.
  
    0.487
Lbys_1728
KEGG: cpi:Cpin_0536 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.463
Lbys_1555
KEGG: fsu:Fisuc_2307 hypothetical protein; SPTR: Putative uncharacterized protein.
   
   0.454
Lbys_0353
RagB/SusD domain protein; InterPro IPR012944; KEGG: rmr:Rmar_1078 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: Putative uncharacterized protein; PFAM: SusD family.
  
 
   0.413
Lbys_2256
KEGG: dfe:Dfer_5660 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.406
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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