STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1582Endonuclease/exonuclease/phosphatase; InterPro IPR005135; KEGG: dfe:Dfer_0035 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family. (363 aa)    
Predicted Functional Partners:
Lbys_1946
InterPro IPR007139; KEGG: sli:Slin_5235 protein of unknown function DUF349; PFAM: protein of unknown function DUF349; SPTR: Putative uncharacterized protein; PFAM: Domain of Unknown Function (DUF349).
  
   
 0.671
Lbys_2495
InterPro IPR005632; KEGG: dfe:Dfer_3973 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like); Uncharacterised protein family UPF0565.
  
     0.629
Lbys_2711
KEGG: sli:Slin_0229 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.608
Lbys_3196
KEGG: bfs:BF3188 putative lipoprotein; SPTR: Putative uncharacterized protein.
  
     0.606
Lbys_1147
KEGG: sli:Slin_0989 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.604
Lbys_2391
KEGG: sli:Slin_5550 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.601
Lbys_3316
Thioredoxin domain-containing protein; InterPro IPR017936:IPR013766; KEGG: sli:Slin_1362 hypothetical protein; PFAM: Thioredoxin domain-containing protein; SPTR: Putative uncharacterized protein; PFAM: Thioredoxin.
  
     0.584
Lbys_3485
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006664:IPR006665:IPR011659; KEGG: sli:Slin_3584 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; WD40-like beta Propeller containing protein; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family.
  
    0.584
Lbys_0844
Cysteine desulfurase, SufS subfamily; COGs: COG0520 Selenocysteine lyase; InterPro IPR010970:IPR000192; KEGG: dfe:Dfer_5780 cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; SPTR: Cysteine desulfurase, SufS subfamily; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.579
Lbys_2163
Aminotransferase class V; COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: dfe:Dfer_3047 aminotransferase class V; PFAM: aminotransferase class V; SPTR: Aminotransferase class V; PFAM: Aminotransferase class-V.
    
   0.579
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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