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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1602Protein of unknown function DUF541; COGs: COG2968 conserved hypothetical protein; InterPro IPR007497; KEGG: sli:Slin_1660 protein of unknown function DUF541; PFAM: protein of unknown function DUF541; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF541). (228 aa)    
Predicted Functional Partners:
Lbys_1599
KEGG: sli:Slin_2668 tetratricopeptide repeat protein; SPTR: Tetratricopeptide repeat protein.
       0.537
Lbys_1600
InterPro IPR002035; KEGG: dfe:Dfer_5483 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: von Willebrand factor type A; PFAM: von Willebrand factor type A domain.
       0.537
Lbys_1601
LmbE family protein; COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: dfe:Dfer_5787 LmbE family protein; PFAM: LmbE family protein; SPTR: LmbE family protein; PFAM: GlcNAc-PI de-N-acetylase.
       0.537
Lbys_1597
Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839:IPR001176; KEGG: sli:Slin_1914 aminotransferase class I and II; PFAM: aminotransferase class I and II; SPTR: Aminotransferase class I and II; PFAM: Aminotransferase class I and II.
  
    0.462
Lbys_2308
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterPro IPR006047:IPR015237:IPR006589; KEGG: zpr:ZPR_2825 alpha-amylase precursor, GH13 family protein; PFAM: alpha amylase catalytic region; Domain of unknown function DUF1939; SMART: alpha amylase catalytic sub domain; SPTR: Alpha-amylase, GH13 family protein; PFAM: Alpha amylase, catalytic domain; Domain of unknown function (DUF1939).
  
     0.458
purC
COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; InterPro IPR001636:IPR018236; KEGG: dfe:Dfer_5481 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase.
       0.457
hppA
V-type H(+)-translocating pyrophosphatase; Sodium pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for Na(+) movement across the membrane. Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-stimulated subfamily.
  
    0.455
Lbys_1595
Protein of unknown function DUF34; COGs: COG0327 conserved hypothetical protein; InterPro IPR002678:IPR017221:IPR001412; KEGG: dfe:Dfer_5147 protein of unknown function DUF34; PFAM: protein of unknown function DUF34; SPTR: Putative uncharacterized protein; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
       0.449
Lbys_1596
Protein of unknown function DUF456; COGs: COG2839 conserved hypothetical protein; InterPro IPR007403; KEGG: pdi:BDI_1735 hypothetical protein; PFAM: protein of unknown function DUF456; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF456).
       0.449
Lbys_1593
ABC transporter related protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439:IPR003593:IPR017871; KEGG: sli:Slin_0799 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter.
       0.438
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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