STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1623Pectinesterase; COGs: COG0657 Esterase/lipase; KEGG: dfe:Dfer_0486 pectinesterase; SPTR: Pectinesterase; PFAM: alpha/beta hydrolase fold. (276 aa)    
Predicted Functional Partners:
Lbys_1625
Pectinesterase; COGs: COG4677 Pectin methylesterase; InterPro IPR000070:IPR018040; KEGG: phe:Phep_1157 pectinesterase; PFAM: Pectinesterase; SPTR: Pectinesterase; PFAM: Pectinesterase.
   
 0.977
Lbys_0587
Pectinesterase; COGs: COG4677 Pectin methylesterase; InterPro IPR018040:IPR000070; KEGG: sli:Slin_4787 pectinesterase; PFAM: Pectinesterase; SPTR: Pectinesterase; PFAM: Pectinesterase.
   
 0.965
Lbys_1624
Pectate lyase; InterPro IPR012669; KEGG: phe:Phep_1159 pectate lyase; PFAM: Pectic acid lyase; SPTR: Pectate lyase; TIGRFAM: pectate lyase; PFAM: Pectic acid lyase; TIGRFAM: pectate lyase, PelA/Pel-15E family.
   
 0.818
Lbys_0951
Hypothetical protein; COGs: COG0657 Esterase/lipase; KEGG: dze:Dd1591_3247 alpha/beta hydrolase fold-3 domain protein; SPTR: Putative uncharacterized protein; PFAM: alpha/beta hydrolase fold.
 
     0.769
Lbys_0588
Glycoside hydrolase family 43; COGs: COG3507 Beta-xylosidase; InterPro IPR006710; KEGG: dfe:Dfer_1500 glycoside hydrolase family 43; PFAM: glycoside hydrolase family 43; SPTR: Glycoside hydrolase family 43; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
     0.755
Lbys_1627
RagB/SusD domain protein; InterPro IPR012944; KEGG: phe:Phep_1154 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
 
     0.707
Lbys_1622
Glycosyl hydrolase family 88; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905; KEGG: dfe:Dfer_2841 glycosyl hydrolase family 88; PFAM: glycosyl hydrolase family 88; SPTR: Glycosyl hydrolase family 88; PFAM: Glycosyl Hydrolase Family 88.
 
     0.681
Lbys_1626
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: phe:Phep_1153 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
     0.681
Lbys_3226
COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterPro IPR001041:IPR019574; KEGG: dfe:Dfer_4082 ferredoxin; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; SPTR: Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region.
    
 
 0.667
Lbys_3225
NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
    
   0.652
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.