STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1624Pectate lyase; InterPro IPR012669; KEGG: phe:Phep_1159 pectate lyase; PFAM: Pectic acid lyase; SPTR: Pectate lyase; TIGRFAM: pectate lyase; PFAM: Pectic acid lyase; TIGRFAM: pectate lyase, PelA/Pel-15E family. (343 aa)    
Predicted Functional Partners:
Lbys_1625
Pectinesterase; COGs: COG4677 Pectin methylesterase; InterPro IPR000070:IPR018040; KEGG: phe:Phep_1157 pectinesterase; PFAM: Pectinesterase; SPTR: Pectinesterase; PFAM: Pectinesterase.
  
 0.992
Lbys_0587
Pectinesterase; COGs: COG4677 Pectin methylesterase; InterPro IPR018040:IPR000070; KEGG: sli:Slin_4787 pectinesterase; PFAM: Pectinesterase; SPTR: Pectinesterase; PFAM: Pectinesterase.
  
 0.969
Lbys_1626
TonB-dependent receptor plug; InterPro IPR012910:IPR000531; KEGG: phe:Phep_1153 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
     0.866
Lbys_1627
RagB/SusD domain protein; InterPro IPR012944; KEGG: phe:Phep_1154 RagB/SusD domain protein; PFAM: RagB/SusD domain protein; SPTR: RagB/SusD domain protein; PFAM: SusD family.
 
    0.864
Lbys_1623
Pectinesterase; COGs: COG0657 Esterase/lipase; KEGG: dfe:Dfer_0486 pectinesterase; SPTR: Pectinesterase; PFAM: alpha/beta hydrolase fold.
   
 0.818
Lbys_1628
InterPro IPR003961:IPR001917; KEGG: phe:Phep_1155 fibronectin type III domain protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; SPTR: Fibronectin type III domain protein; PFAM: Fibronectin type III domain.
  
    0.770
Lbys_1641
Glycoside hydrolase family 28; COGs: COG5434 Endopygalactorunase; InterPro IPR001087:IPR000743:IPR006626; KEGG: cpi:Cpin_5506 lipolytic protein G-D-S-L family; PFAM: glycoside hydrolase family 28; lipolytic protein G-D-S-L family; SPTR: Lipolytic protein G-D-S-L family; PFAM: Glycosyl hydrolases family 28; GDSL-like Lipase/Acylhydrolase.
  
 0.750
Lbys_2355
Glycosyl hydrolase family 88; COGs: COG4225 unsaturated glucuronyl hydrolase involved in regulation of surface properties and related protein; InterPro IPR010905:IPR001087; KEGG: bvu:BVU_0151 putative cytoplasmic protein; PFAM: glycosyl hydrolase family 88; lipolytic protein G-D-S-L family; SPTR: Putative uncharacterized protein; PFAM: Glycosyl Hydrolase Family 88; GDSL-like Lipase/Acylhydrolase.
  
 0.694
Lbys_2351
Glycoside hydrolase family 28; COGs: COG5434 Endopygalactorunase; InterPro IPR000568:IPR000743:IPR006626; KEGG: bth:BT_4146 exo-poly-alpha-D-galacturonosidase precursor; PFAM: glycoside hydrolase family 28; SPTR: Exo-poly-alpha-D-galacturonosidase; PFAM: Glycosyl hydrolases family 28.
 
   
 0.659
Lbys_2356
KEGG: bth:BT_4175 hypothetical protein; SPTR: FG-GAP repeat protein.
  
  
 0.636
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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