STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1728KEGG: cpi:Cpin_0536 hypothetical protein; SPTR: Putative uncharacterized protein. (517 aa)    
Predicted Functional Partners:
Lbys_1458
KEGG: sli:Slin_5160 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
     0.769
Lbys_1725
Putative membrane protein; InterPro IPR019861; KEGG: dfe:Dfer_2914 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: putative membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific putative membrane protein.
 
     0.666
Lbys_1571
KEGG: dfe:Dfer_3201 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.619
Lbys_2711
KEGG: sli:Slin_0229 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.605
Lbys_3483
Hypothetical protein; KEGG: dfe:Dfer_5750 surface antigen (D15); SPTR: Surface antigen (D15).
  
    0.593
Lbys_1726
COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: sli:Slin_3227 uroporphyrinogen III synthase HEM4; PFAM: Uroporphyrinogen III synthase HEM4; SPTR: Possible uroporphyrinogen-III synthase; PFAM: Uroporphyrinogen-III synthase HemD.
 
     0.577
Lbys_1484
Hypothetical protein; InterPro IPR006162; KEGG: dfe:Dfer_1757 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.573
Lbys_1730
COGs: COG3281 Uncharacterized protein probably involved in trehalose biosynthesis; KEGG: sli:Slin_0399 trehalose synthase-fused maltokinase-like protein; SPTR: Trehalose synthase-fused maltokinase-like protein; TIGRFAM: trehalose synthase-fused probable maltokinase.
       0.572
Lbys_1731
KEGG: dfe:Dfer_4012 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.572
Lbys_3033
KEGG: dfe:Dfer_0219 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.570
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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