STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lbys_1775COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dfe:Dfer_4272 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Aldehyde Dehydrogenase; PFAM: Aldehyde dehydrogenase family. (485 aa)    
Predicted Functional Partners:
Lbys_1449
COGs: COG3970 Fumarylacetoacetate (FAA) hydrolase family protein; InterPro IPR002529; KEGG: dfe:Dfer_3859 fumarylacetoacetate (FAA) hydrolase; PFAM: fumarylacetoacetate (FAA) hydrolase; SPTR: Fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetate (FAA) hydrolase family.
 
 
 0.948
Lbys_1776
COGs: COG3938 Proline racemase; InterPro IPR008794; KEGG: dfe:Dfer_4273 hydroxyproline-2-epimerase; PFAM: proline racemase; PRIAM: 4-hydroxyproline epimerase; SPTR: Proline racemase; PFAM: Proline racemase; Belongs to the proline racemase family.
 
 
 
 0.940
Lbys_1777
FAD dependent oxidoreductase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: dfe:Dfer_4274 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase.
 
  
 0.916
Lbys_1774
COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR002220; KEGG: sli:Slin_1479 dihydrodipicolinate synthetase; PFAM: dihydrodipicolinate synthetase; SPTR: Possible dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase family; Belongs to the DapA family.
 
  
 0.912
Lbys_3488
COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); InterPro IPR001017:IPR005475:IPR011603; KEGG: dfe:Dfer_5752 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component; PRIAM: Oxoglutarate dehydrogenase (succinyl-transferring); SPTR: 2-oxoglutarate dehydrogenase, E1 subunit; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component.
   
 
 0.830
Lbys_3113
Isocitrate dehydrogenase, NADP-dependent; COGs: COG2838 Monomeric isocitrate dehydrogenase; InterPro IPR004436; KEGG: vcj:VCD_003201 isocitrate dehydrogenase (NADP); PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: Isocitrate dehydrogenase [NADP]; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Monomeric isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, monomeric type; Belongs to the monomeric-type IDH family.
   
 
  0.803
Lbys_1778
Protein of unknown function DUF885; COGs: COG4805 conserved hypothetical protein; InterPro IPR010281; KEGG: dfe:Dfer_1442 protein of unknown function DUF885; PFAM: protein of unknown function DUF885; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF885).
       0.737
Lbys_0673
COGs: COG0281 Malic enzyme; InterPro IPR012188:IPR012301:IPR012302:IPR002505; KEGG: dfe:Dfer_0248 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., phosphate acetyltransferase; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; SPTR: Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase; PFAM: Malic enzyme, NAD binding domain; Phosphate acetyl/butaryl transferase; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase.
  
  
 0.462
lysS
COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR004365:IPR004364:IPR018149:IPR002313:IPR 006195; KEGG: dfe:Dfer_4009 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.454
Lbys_0013
5-deoxyglucuronate isomerase; COGs: COG3718 Uncharacterized protein involved in inositol metabolism; KEGG: dfe:Dfer_5701 myo-inositol catabolism IolB domain protein; SPTR: Myo-inositol catabolism IolB domain protein; PFAM: KduI/IolB family.
  
  
 0.446
Your Current Organism:
Leadbetterella byssophila
NCBI taxonomy Id: 649349
Other names: L. byssophila DSM 17132, Leadbetterella byssophila 4M15, Leadbetterella byssophila DSM 17132, Leadbetterella byssophila str. DSM 17132, Leadbetterella byssophila strain DSM 17132
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